IL_8YLD_004

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8YLD|1|2|U|45, 8YLD|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_004 not in the Motif Atlas

Homologous match to IL_8C3A_395

Geometric discrepancy: 0.2068

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8YLD|1|2|G|42
8YLD|1|2|A|43
8YLD|1|2|U|44
8YLD|1|2|U|45
8YLD|1|2|A|46
8YLD|1|2|A|47
8YLD|1|2|G|48
*
8YLD|1|2|C|431
8YLD|1|2|G|432
8YLD|1|2|C|433

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A

Chain x

Elongation factor 2