IL_8YLD_006
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- 8YLD|1|2|A|61, 8YLD|1|2|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_006 not in the Motif Atlas
- Homologous match to IL_8P9A_378
- Geometric discrepancy: 0.25
- The information below is about IL_8P9A_378
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.4
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8YLD|1|2|U|58
8YLD|1|2|C|59
8YLD|1|2|U|60
8YLD|1|2|A|61
8YLD|1|2|A|62
8YLD|1|2|G|63
*
8YLD|1|2|C|87
8YLD|1|2|U|88
8YLD|1|2|G|89
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain Sd
- Small ribosomal subunit protein eS24A
Coloring options: