IL_8YLD_007

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUAAG*UGAAA

Length

11 nucleotides

Bulged bases

8YLD|1|2|U|66, 8YLD|1|2|A|68

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_007 not in the Motif Atlas

Homologous match to IL_8P9A_379

Geometric discrepancy: 0.2047

The information below is about IL_8P9A_379

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21667.2

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8YLD|1|2|U|64
8YLD|1|2|A|65
8YLD|1|2|U|66
8YLD|1|2|A|67
8YLD|1|2|A|68
8YLD|1|2|G|69
*
8YLD|1|2|U|82
8YLD|1|2|G|83
8YLD|1|2|A|84
8YLD|1|2|A|85
8YLD|1|2|A|86

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Sd

Small ribosomal subunit protein eS24A

Chain Y

Large ribosomal subunit protein eL24A