3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGUG*UAGA
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YLD_012 not in the Motif Atlas
Homologous match to IL_8C3A_403
Geometric discrepancy: 0.5062
The information below is about IL_8C3A_403
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86374.1
Basepair signature
cWW-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

8YLD|1|2|U|150
8YLD|1|2|G|151
8YLD|1|2|U|152
8YLD|1|2|G|153
*
8YLD|1|2|U|161
8YLD|1|2|A|162
8YLD|1|2|G|163
8YLD|1|2|A|164

Current chains

Chain 2
18S rRNA

Nearby chains

Chain ST
Small ribosomal subunit protein eS6A
Chain Sd
Small ribosomal subunit protein eS24A

Coloring options:


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