IL_8YLD_016

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

8YLD|1|2|A|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_016 not in the Motif Atlas

Homologous match to IL_8P9A_388

Geometric discrepancy: 0.1936

The information below is about IL_8P9A_388

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8YLD|1|2|A|265
8YLD|1|2|A|266
8YLD|1|2|U|267
*
8YLD|1|2|A|288
8YLD|1|2|U|289

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A