IL_8YLD_020

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_020 not in the Motif Atlas

Homologous match to IL_8C3A_411

Geometric discrepancy: 0.2319

The information below is about IL_8C3A_411

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71854.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8YLD|1|2|U|318
8YLD|1|2|U|319
8YLD|1|2|U|320
8YLD|1|2|C|321
8YLD|1|2|G|322
8YLD|1|2|A|323
*
8YLD|1|2|U|345
8YLD|1|2|G|346

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A