3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUUAAAA*UC
Length
9 nucleotides
Bulged bases
8YLD|1|2|A|619
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YLD_032 not in the Motif Atlas
Homologous match to IL_8C3A_426
Geometric discrepancy: 0.2056
The information below is about IL_8C3A_426
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.4
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
5

Unit IDs

8YLD|1|2|G|616
8YLD|1|2|U|617
8YLD|1|2|U|618
8YLD|1|2|A|619
8YLD|1|2|A|620
8YLD|1|2|A|621
8YLD|1|2|A|622
*
8YLD|1|2|U|1104
8YLD|1|2|C|1105

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SR
Small ribosomal subunit protein uS5
Chain Sc
Small ribosomal subunit protein uS12A
Chain Se
Small ribosomal subunit protein eS26A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3364 s