IL_8YLD_046
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8YLD|1|2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_046 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2618
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8YLD|1|2|U|893
8YLD|1|2|U|894
8YLD|1|2|G|895
8YLD|1|2|U|896
8YLD|1|2|C|897
8YLD|1|2|A|898
8YLD|1|2|G|899
*
8YLD|1|2|C|910
8YLD|1|2|U|911
8YLD|1|2|U|912
8YLD|1|2|G|913
8YLD|1|2|G|914
8YLD|1|2|A|915
8YLD|1|2|U|916
8YLD|1|2|U|917
8YLD|1|2|U|918
8YLD|1|2|A|919
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SZ
- Small ribosomal subunit protein uS11B
Coloring options: