IL_8YLD_049
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8YLD|1|2|C|1096, 8YLD|1|2|U|1098, 8YLD|1|2|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_049 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.1874
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|2|C|1034
8YLD|1|2|G|1035
8YLD|1|2|A|1036
*
8YLD|1|2|U|1095
8YLD|1|2|C|1096
8YLD|1|2|U|1097
8YLD|1|2|U|1098
8YLD|1|2|U|1099
8YLD|1|2|G|1100
8YLD|1|2|G|1101
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SR
- Small ribosomal subunit protein uS5
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sa
- Small ribosomal subunit protein eS21A
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sf
- Small ribosomal subunit protein eS27A
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