IL_8YLD_052

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|2|G|1111
8YLD|1|2|G|1112
8YLD|1|2|A|1113
8YLD|1|2|G|1114
8YLD|1|2|U|1115
8YLD|1|2|A|1116
8YLD|1|2|U|1117
8YLD|1|2|G|1118
8YLD|1|2|G|1119
*
8YLD|1|2|C|1128
8YLD|1|2|U|1129
8YLD|1|2|G|1130
8YLD|1|2|A|1131
8YLD|1|2|A|1132
8YLD|1|2|A|1133
8YLD|1|2|C|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Sc

Small ribosomal subunit protein uS12A

Chain p

Large ribosomal subunit protein eL41A