IL_8YLD_061

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUG*CUUGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|2|A|1230
8YLD|1|2|U|1231
8YLD|1|2|U|1232
8YLD|1|2|G|1233
*
8YLD|1|2|C|1252
8YLD|1|2|U|1253
8YLD|1|2|U|1254
8YLD|1|2|G|1255
8YLD|1|2|A|1256
8YLD|1|2|U|1257

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

Small ribosomal subunit protein eS10A

Chain SD

Small ribosomal subunit protein eS12

Chain SN

Small ribosomal subunit protein eS31