IL_8YLD_077

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8YLD|1|2|C|1637, 8YLD|1|2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_077 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.1599

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8YLD|1|2|C|1636
8YLD|1|2|C|1637
8YLD|1|2|G|1638
*
8YLD|1|2|C|1764
8YLD|1|2|A|1765
8YLD|1|2|A|1766
8YLD|1|2|G|1767

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Se

Small ribosomal subunit protein eS26A

Chain t

Transfer RNA; tRNA