IL_8YLD_082

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUUG*UAGAG

Length

11 nucleotides

Bulged bases

8YLD|1|2|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|2|C|1653
8YLD|1|2|G|1654
8YLD|1|2|A|1655
8YLD|1|2|U|1656
8YLD|1|2|U|1657
8YLD|1|2|G|1658
*
8YLD|1|2|U|1743
8YLD|1|2|A|1744
8YLD|1|2|G|1745
8YLD|1|2|A|1746
8YLD|1|2|G|1747

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Sc

Small ribosomal subunit protein uS12A

Chain X

Large ribosomal subunit protein uL14A

Chain p

Large ribosomal subunit protein eL41A