3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UAGAG*CUCAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8YLD|1|2|U|1688
8YLD|1|2|A|1689
8YLD|1|2|G|1690
8YLD|1|2|A|1691
8YLD|1|2|G|1692
*
8YLD|1|2|C|1709
8YLD|1|2|U|1710
8YLD|1|2|C|1711
8YLD|1|2|A|1712
8YLD|1|2|G|1713

Current chains

Chain 2
18S rRNA

Nearby chains

Chain ST
Small ribosomal subunit protein eS6A

Coloring options:

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