3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUUAGUAA*UGAAGCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8YLD_094 not in the Motif Atlas
Homologous match to IL_8P9A_235
Geometric discrepancy: 0.2022
The information below is about IL_8P9A_235
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_53348.1
Basepair signature
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8YLD|1|A|C|82
8YLD|1|A|U|83
8YLD|1|A|U|84
8YLD|1|A|A|85
8YLD|1|A|G|86
8YLD|1|A|U|87
8YLD|1|A|A|88
8YLD|1|A|A|89
*
8YLD|1|A|U|97
8YLD|1|A|G|98
8YLD|1|A|A|99
8YLD|1|A|A|100
8YLD|1|A|G|101
8YLD|1|A|C|102
8YLD|1|A|G|103

Current chains

Chain A
25S rRNA

Nearby chains

Chain N
Large ribosomal subunit protein eL13A
Chain P
Large ribosomal subunit protein eL15A
Chain S
Large ribosomal subunit protein eL18A
Chain c
Large ribosomal subunit protein uL15

Coloring options:


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