IL_8YLD_102
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_102 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.2485
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8YLD|1|A|G|404
8YLD|1|A|U|405
8YLD|1|A|G|406
8YLD|1|A|A|407
8YLD|1|A|A|408
8YLD|1|A|A|409
8YLD|1|A|U|410
*
8YLD|1|C|A|13
8YLD|1|C|C|14
8YLD|1|C|G|15
8YLD|1|C|G|16
8YLD|1|C|A|17
8YLD|1|C|U|18
8YLD|1|C|C|19
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain R
- Large ribosomal subunit protein uL22A
- Chain g
- Large ribosomal subunit protein eL32
Coloring options: