IL_8YLD_105
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8YLD|1|A|A|519, 8YLD|1|A|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_105 not in the Motif Atlas
- Homologous match to IL_8P9A_247
- Geometric discrepancy: 0.1509
- The information below is about IL_8P9A_247
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58126.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|A|G|517
8YLD|1|A|G|518
8YLD|1|A|A|519
8YLD|1|A|U|520
8YLD|1|A|A|521
8YLD|1|A|A|522
8YLD|1|A|A|523
8YLD|1|A|U|524
8YLD|1|A|C|525
*
8YLD|1|A|G|567
8YLD|1|A|G|568
8YLD|1|A|A|569
8YLD|1|A|A|570
8YLD|1|A|U|571
8YLD|1|A|A|572
8YLD|1|A|C|573
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain I
- Large ribosomal subunit protein uL30A
- Chain O
- Large ribosomal subunit protein eL14A
- Chain U
- Large ribosomal subunit protein eL20A
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