IL_8YLD_123

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUU*AAU

Length

7 nucleotides

Bulged bases

8YLD|1|A|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_123 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2889

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8YLD|1|A|A|983
8YLD|1|A|G|984
8YLD|1|A|U|985
8YLD|1|A|U|986
*
8YLD|1|A|A|1098
8YLD|1|A|A|1099
8YLD|1|A|U|1100

Current chains

Chain A

25S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL30A

Chain V

Large ribosomal subunit protein eL21A

Chain d

Large ribosomal subunit protein eL29