3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGGUAAA*UUUAAAUAU
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8YLD|1|A|G|991
8YLD|1|A|A|992
8YLD|1|A|G|993
8YLD|1|A|G|994
8YLD|1|A|U|995
8YLD|1|A|A|996
8YLD|1|A|A|997
8YLD|1|A|A|998
*
8YLD|1|A|U|1050
8YLD|1|A|U|1051
8YLD|1|A|U|1052
8YLD|1|A|A|1053
8YLD|1|A|A|1054
8YLD|1|A|A|1055
8YLD|1|A|U|1056
8YLD|1|A|A|1057
8YLD|1|A|U|1058

Current chains

Chain A
25S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain G
Large ribosomal subunit protein uL18
Chain I
Large ribosomal subunit protein uL30A
Chain L
Large ribosomal subunit protein uL16
Chain V
Large ribosomal subunit protein eL21A
Chain d
Large ribosomal subunit protein eL29

Coloring options:

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