IL_8YLD_130
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAC*GA
- Length
- 5 nucleotides
- Bulged bases
- 8YLD|1|A|A|1075
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_130 not in the Motif Atlas
- Homologous match to IL_8C3A_048
- Geometric discrepancy: 0.1683
- The information below is about IL_8C3A_048
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
8YLD|1|A|U|1074
8YLD|1|A|A|1075
8YLD|1|A|C|1076
*
8YLD|1|A|G|1083
8YLD|1|A|A|1084
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL18
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
Coloring options: