IL_8YLD_135
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8YLD|1|A|C|1196, 8YLD|1|A|A|1302, 8YLD|1|A|U|1305, 8YLD|1|A|G|1306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_135 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.1501
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8YLD|1|A|G|1194
8YLD|1|A|A|1195
8YLD|1|A|C|1196
8YLD|1|A|A|1197
8YLD|1|A|C|1198
8YLD|1|A|C|1199
8YLD|1|A|A|1200
8YLD|1|A|C|1201
8YLD|1|A|A|1202
8YLD|1|A|A|1203
8YLD|1|A|A|1204
8YLD|1|A|A|1205
*
8YLD|1|A|U|1299
8YLD|1|A|G|1300
8YLD|1|A|A|1301
8YLD|1|A|A|1302
8YLD|1|A|A|1303
8YLD|1|A|A|1304
8YLD|1|A|U|1305
8YLD|1|A|G|1306
8YLD|1|A|G|1307
8YLD|1|A|A|1308
8YLD|1|A|U|1309
8YLD|1|A|G|1310
8YLD|1|A|G|1311
8YLD|1|A|C|1312
8YLD|1|A|G|1313
8YLD|1|A|C|1314
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- Large ribosomal subunit protein uL3
- Chain I
- Large ribosomal subunit protein uL30A
- Chain L
- Large ribosomal subunit protein uL16
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain h
- Large ribosomal subunit protein eL33A
- Chain o
- Large ribosomal subunit protein eL40A
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