IL_8YLD_152
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUAUCA*UCUUAUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_152 not in the Motif Atlas
- Homologous match to IL_8P9A_300
- Geometric discrepancy: 0.1836
- The information below is about IL_8P9A_300
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLD|1|A|U|1702
8YLD|1|A|U|1703
8YLD|1|A|A|1704
8YLD|1|A|U|1705
8YLD|1|A|C|1706
8YLD|1|A|A|1707
*
8YLD|1|A|U|1737
8YLD|1|A|C|1738
8YLD|1|A|U|1739
8YLD|1|A|U|1740
8YLD|1|A|A|1741
8YLD|1|A|U|1742
8YLD|1|A|G|1743
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain i
- Large ribosomal subunit protein eL34A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: