IL_8YLD_153
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8YLD|1|A|U|1716, 8YLD|1|A|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_153 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.1434
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69543.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8YLD|1|A|C|1711
8YLD|1|A|G|1712
8YLD|1|A|G|1713
8YLD|1|A|A|1714
8YLD|1|A|A|1715
8YLD|1|A|U|1716
8YLD|1|A|U|1717
*
8YLD|1|A|G|1727
8YLD|1|A|G|1728
8YLD|1|A|A|1729
8YLD|1|A|G|1730
8YLD|1|A|A|1731
8YLD|1|A|U|1732
8YLD|1|A|G|1733
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain SY
- Small ribosomal subunit protein uS15
- Chain T
- Large ribosomal subunit protein eL19A
- Chain b
- Large ribosomal subunit protein eL27A
- Chain e
- Large ribosomal subunit protein eL30
- Chain i
- Large ribosomal subunit protein eL34A
- Chain r
- Large ribosomal subunit protein eL43A
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