IL_8YLD_154

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAUAAUG*CUAUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|G|1882
8YLD|1|A|A|1883
8YLD|1|A|A|1884
8YLD|1|A|U|1885
8YLD|1|A|A|1886
8YLD|1|A|A|1887
8YLD|1|A|U|1888
8YLD|1|A|G|1889
*
8YLD|1|A|C|2346
8YLD|1|A|U|2347
8YLD|1|A|A|2348
8YLD|1|A|U|2349
8YLD|1|A|C|2350

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain R

Large ribosomal subunit protein uL22A

Chain f

Large ribosomal subunit protein eL31A