IL_8YLD_164

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8YLD|1|A|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_164 not in the Motif Atlas

Homologous match to IL_8P9A_312

Geometric discrepancy: 0.2746

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8YLD|1|A|C|2196
8YLD|1|A|C|2197
8YLD|1|A|A|2198
8YLD|1|A|G|2199
*
8YLD|1|A|C|2245
8YLD|1|A|G|2246

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain D

Large ribosomal subunit protein uL2A