IL_8YLD_166

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8YLD|1|A|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_166 not in the Motif Atlas

Homologous match to IL_8P9A_314

Geometric discrepancy: 0.4331

The information below is about IL_8P9A_314

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8YLD|1|A|C|2204
8YLD|1|A|U|2205
8YLD|1|A|G|2206
*
8YLD|1|A|C|2237
8YLD|1|A|G|2238

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain D

Large ribosomal subunit protein uL2A

Chain t

Transfer RNA; tRNA