IL_8YLD_176

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGACAU*AUAGUUU

Length

13 nucleotides

Bulged bases

8YLD|1|A|A|2502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|A|2441
8YLD|1|A|G|2442
8YLD|1|A|A|2443
8YLD|1|A|C|2444
8YLD|1|A|A|2445
8YLD|1|A|U|2446
*
8YLD|1|A|A|2500
8YLD|1|A|U|2501
8YLD|1|A|A|2502
8YLD|1|A|G|2503
8YLD|1|A|U|2504
8YLD|1|A|U|2505
8YLD|1|A|U|2506

Current chains

Chain A

25S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain k

Large ribosomal subunit protein eL36A