IL_8YLD_178

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUAGAAUAAG*CUAC

Length

16 nucleotides

Bulged bases

8YLD|1|A|U|2453, 8YLD|1|A|U|2460, 8YLD|1|A|U|2493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|G|2452
8YLD|1|A|U|2453
8YLD|1|A|G|2454
8YLD|1|A|U|2455
8YLD|1|A|A|2456
8YLD|1|A|G|2457
8YLD|1|A|A|2458
8YLD|1|A|A|2459
8YLD|1|A|U|2460
8YLD|1|A|A|2461
8YLD|1|A|A|2462
8YLD|1|A|G|2463
*
8YLD|1|A|C|2492
8YLD|1|A|U|2493
8YLD|1|A|A|2494
8YLD|1|A|C|2495

Current chains

Chain A

25S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS25A

Chain t

Transfer RNA; tRNA