3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGAG*CGCCAGUGAAAUAC
Length
18 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8YLD|1|A|G|2466
8YLD|1|A|G|2467
8YLD|1|A|A|2468
8YLD|1|A|G|2469
*
8YLD|1|A|C|2476
8YLD|1|A|G|2477
8YLD|1|A|C|2478
8YLD|1|A|C|2479
8YLD|1|A|A|2480
8YLD|1|A|G|2481
8YLD|1|A|U|2482
8YLD|1|A|G|2483
8YLD|1|A|A|2484
8YLD|1|A|A|2485
8YLD|1|A|A|2486
8YLD|1|A|U|2487
8YLD|1|A|A|2488
8YLD|1|A|C|2489

Current chains

Chain A
25S rRNA

Nearby chains

Chain SK
Small ribosomal subunit protein eS25A
Chain t
Transfer RNA; tRNA

Coloring options:

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