IL_8YLD_179

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|G|2466
8YLD|1|A|G|2467
8YLD|1|A|A|2468
8YLD|1|A|G|2469
*
8YLD|1|A|C|2476
8YLD|1|A|G|2477
8YLD|1|A|C|2478
8YLD|1|A|C|2479
8YLD|1|A|A|2480
8YLD|1|A|G|2481
8YLD|1|A|U|2482
8YLD|1|A|G|2483
8YLD|1|A|A|2484
8YLD|1|A|A|2485
8YLD|1|A|A|2486
8YLD|1|A|U|2487
8YLD|1|A|A|2488
8YLD|1|A|C|2489

Current chains

Chain A

25S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS25A

Chain t

Transfer RNA; tRNA