IL_8YLD_192
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CU*AACG
- Length
- 6 nucleotides
- Bulged bases
- 8YLD|1|A|A|2941, 8YLD|1|A|C|2942
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_192 not in the Motif Atlas
- Homologous match to IL_8C3A_117
- Geometric discrepancy: 0.129
- The information below is about IL_8C3A_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24807.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8YLD|1|A|C|2881
8YLD|1|A|U|2882
*
8YLD|1|A|A|2940
8YLD|1|A|A|2941
8YLD|1|A|C|2942
8YLD|1|A|G|2943
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain X
- Large ribosomal subunit protein uL14A
- Chain s
- Transfer RNA; tRNA
Coloring options: