IL_8YLD_200
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 8YLD|1|A|C|3092, 8YLD|1|A|C|3093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_200 not in the Motif Atlas
- Homologous match to IL_8P9A_345
- Geometric discrepancy: 0.1807
- The information below is about IL_8P9A_345
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06671.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
8YLD|1|A|U|3047
8YLD|1|A|A|3048
8YLD|1|A|A|3049
8YLD|1|A|U|3050
8YLD|1|A|U|3051
*
8YLD|1|A|A|3091
8YLD|1|A|C|3092
8YLD|1|A|C|3093
8YLD|1|A|A|3094
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain X
- Large ribosomal subunit protein uL14A
- Chain Y
- Large ribosomal subunit protein eL24A
Coloring options: