IL_8YLD_205
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8YLD|1|A|A|3178
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_205 not in the Motif Atlas
- Homologous match to IL_8P9A_351
- Geometric discrepancy: 0.1781
- The information below is about IL_8P9A_351
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 134
Unit IDs
8YLD|1|A|G|3177
8YLD|1|A|A|3178
8YLD|1|A|U|3179
*
8YLD|1|A|A|3210
8YLD|1|A|C|3211
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain H
- Large ribosomal subunit protein eL6B
- Chain O
- Large ribosomal subunit protein eL14A
- Chain Q
- Large ribosomal subunit protein uL13A
- Chain U
- Large ribosomal subunit protein eL20A
- Chain h
- Large ribosomal subunit protein eL33A
Coloring options: