IL_8YLD_216

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8YLD|1|A|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YLD_216 not in the Motif Atlas

Homologous match to IL_8C3A_140

Geometric discrepancy: 0.2652

The information below is about IL_8C3A_140

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8YLD|1|A|G|3340
8YLD|1|A|U|3341
8YLD|1|A|A|3342
*
8YLD|1|A|U|3363
8YLD|1|A|C|3364

Current chains

Chain A

25S rRNA

Nearby chains

Chain Y

Large ribosomal subunit protein eL24A