IL_8YLD_222
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8YLD|1|B|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_222 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.146
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8YLD|1|B|A|72
8YLD|1|B|C|73
8YLD|1|B|C|74
8YLD|1|B|G|75
8YLD|1|B|A|76
8YLD|1|B|G|77
8YLD|1|B|U|78
8YLD|1|B|A|79
8YLD|1|B|G|80
*
8YLD|1|B|C|100
8YLD|1|B|G|101
8YLD|1|B|A|102
8YLD|1|B|A|103
8YLD|1|B|A|104
8YLD|1|B|C|105
8YLD|1|B|U|106
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- Large ribosomal subunit protein uL30A
- Chain L
- Large ribosomal subunit protein uL16
- Chain U
- Large ribosomal subunit protein eL20A
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