IL_8YLD_228
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YLD_228 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3795
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|2|G|751
8YLD|1|2|A|752
8YLD|1|2|A|753
8YLD|1|2|A|754
8YLD|1|2|A|755
8YLD|1|2|A|756
8YLD|1|2|A|757
8YLD|1|2|U|758
8YLD|1|2|U|759
*
8YLD|1|2|A|791
8YLD|1|2|U|792
8YLD|1|2|A|793
8YLD|1|2|U|794
8YLD|1|2|U|795
8YLD|1|2|A|796
8YLD|1|2|G|797
8YLD|1|2|C|798
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain Sb
- Small ribosomal subunit protein uS8A
Coloring options: