IL_8YLD_241
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAU
- Length
- 39 nucleotides
- Bulged bases
- 8YLD|1|A|U|2537, 8YLD|1|A|U|2538, 8YLD|1|A|A|2540, 8YLD|1|A|G|2549, 8YLD|1|A|U|2550, 8YLD|1|A|U|2551, 8YLD|1|A|C|2552, 8YLD|1|A|U|2553, 8YLD|1|A|A|2554, 8YLD|1|A|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|A|2529
8YLD|1|A|G|2530
8YLD|1|A|C|2531
8YLD|1|A|U|2532
8YLD|1|A|G|2533
8YLD|1|A|G|2534
8YLD|1|A|A|2535
8YLD|1|A|A|2536
8YLD|1|A|U|2537
8YLD|1|A|U|2538
8YLD|1|A|C|2539
8YLD|1|A|A|2540
8YLD|1|A|U|2541
8YLD|1|A|U|2542
8YLD|1|A|U|2543
8YLD|1|A|U|2544
8YLD|1|A|C|2545
8YLD|1|A|C|2546
8YLD|1|A|A|2547
8YLD|1|A|C|2548
8YLD|1|A|G|2549
8YLD|1|A|U|2550
8YLD|1|A|U|2551
8YLD|1|A|C|2552
8YLD|1|A|U|2553
8YLD|1|A|A|2554
8YLD|1|A|G|2555
8YLD|1|A|C|2556
8YLD|1|A|A|2557
8YLD|1|A|U|2558
8YLD|1|A|U|2559
8YLD|1|A|C|2560
8YLD|1|A|A|2561
8YLD|1|A|A|2562
8YLD|1|A|G|2563
*
8YLD|1|A|U|2578
8YLD|1|A|G|2579
8YLD|1|A|A|2580
8YLD|1|A|U|2581
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain b
- Large ribosomal subunit protein eL27A
- Chain e
- Large ribosomal subunit protein eL30
- Chain i
- Large ribosomal subunit protein eL34A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: