IL_8YOO_009

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GCUCC*GCCC

Length

9 nucleotides

Bulged bases

8YOO|1|L5|U|171, 8YOO|1|L5|C|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|G|169
8YOO|1|L5|C|170
8YOO|1|L5|U|171
8YOO|1|L5|C|172
8YOO|1|L5|C|173
*
8YOO|1|L5|G|263
8YOO|1|L5|C|264
8YOO|1|L5|C|265
8YOO|1|L5|C|266

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35