IL_8YOO_125

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAAUGUCAAAGU*AAUGAAGCGC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|G|3710
8YOO|1|L5|A|3711
8YOO|1|L5|A|3712
8YOO|1|L5|U|3713
8YOO|1|L5|G|3714
8YOO|1|L5|U|3715
8YOO|1|L5|C|3716
8YOO|1|L5|A|3717
8YOO|1|L5|A|3718
8YOO|1|L5|A|3719
8YOO|1|L5|G|3720
8YOO|1|L5|U|3721
*
8YOO|1|L5|A|3732
8YOO|1|L5|A|3733
8YOO|1|L5|U|3734
8YOO|1|L5|G|3735
8YOO|1|L5|A|3736
8YOO|1|L5|A|3737
8YOO|1|L5|G|3738
8YOO|1|L5|C|3739
8YOO|1|L5|G|3740
8YOO|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain S2

Small subunit ribosomal RNA; SSU rRNA