IL_8YOO_213

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

8YOO|1|S2|A|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_213 not in the Motif Atlas

Geometric match to IL_9H3G_126

Geometric discrepancy: 0.2929

The information below is about IL_9H3G_126

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

8YOO|1|S2|U|530
8YOO|1|S2|A|531
*
8YOO|1|S2|U|553
8YOO|1|S2|A|554
8YOO|1|S2|A|555

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30