IL_8YOO_230

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8YOO|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOO_230 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.0842

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8YOO|1|S2|G|924
8YOO|1|S2|G|925
8YOO|1|S2|A|926
8YOO|1|S2|C|927
*
8YOO|1|S2|G|1014
8YOO|1|S2|U|1015
8YOO|1|S2|U|1016
8YOO|1|S2|U|1017
8YOO|1|S2|U|1018

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27