IL_8YOO_278

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGCGGCCCGG*UCCCCC

Length

16 nucleotides

Bulged bases

8YOO|1|L5|C|501, 8YOO|1|L5|C|502, 8YOO|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|G|496
8YOO|1|L5|G|497
8YOO|1|L5|C|498
8YOO|1|L5|G|499
8YOO|1|L5|G|500
8YOO|1|L5|C|501
8YOO|1|L5|C|502
8YOO|1|L5|C|503
8YOO|1|L5|G|504
8YOO|1|L5|G|505
*
8YOO|1|L5|U|653
8YOO|1|L5|C|654
8YOO|1|L5|C|655
8YOO|1|L5|C|656
8YOO|1|L5|C|657
8YOO|1|L5|C|658

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a