IL_8YOP_016
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8YOP|1|L5|G|409, 8YOP|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_016 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1042
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8YOP|1|L5|G|387
8YOP|1|L5|A|388
8YOP|1|L5|A|389
8YOP|1|L5|C|390
*
8YOP|1|L5|G|401
8YOP|1|L5|A|402
8YOP|1|L5|G|403
8YOP|1|L5|U|404
8YOP|1|L5|U|405
8YOP|1|L5|C|406
8YOP|1|L5|A|407
8YOP|1|L5|A|408
8YOP|1|L5|G|409
8YOP|1|L5|A|410
8YOP|1|L5|G|411
8YOP|1|L5|G|412
8YOP|1|L5|G|413
8YOP|1|L5|C|414
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: