IL_8YOP_018
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- 8YOP|1|L5|C|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YOP_018 not in the Motif Atlas
- Geometric match to IL_7MLW_007
- Geometric discrepancy: 0.3839
- The information below is about IL_7MLW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49140.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8YOP|1|L5|G|443
8YOP|1|L5|G|444
8YOP|1|L5|U|445
8YOP|1|L5|C|446
*
8YOP|1|L5|G|1300
8YOP|1|L5|C|1301
8YOP|1|L5|U|1302
8YOP|1|L5|A|1303
8YOP|1|L5|C|1304
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
Coloring options: