IL_8YOP_030

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_030 not in the Motif Atlas

Geometric match to IL_4M4O_004

Geometric discrepancy: 0.375

The information below is about IL_4M4O_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8YOP|1|L5|C|516
8YOP|1|L5|C|517
8YOP|1|L5|G|518
*
8YOP|1|L5|C|643
8YOP|1|L5|G|644
8YOP|1|L5|G|645

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13