IL_8YOP_047

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGCG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGCG,CGCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|G|1170
8YOP|1|L5|G|1171
8YOP|1|L5|C|1172
8YOP|1|L5|G|1173
*
8YOP|1|L5|C|1188
8YOP|1|L5|G|1189
8YOP|1|L5|C|1190
8YOP|1|L5|C|1191

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5