IL_8YOP_089

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8YOP|1|L5|G|1975, 8YOP|1|L5|U|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_089 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3985

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8YOP|1|L5|G|1973
8YOP|1|L5|U|1974
8YOP|1|L5|G|1975
8YOP|1|L5|G|1976
8YOP|1|L5|C|1977
*
8YOP|1|L5|G|1989
8YOP|1|L5|A|1990
8YOP|1|L5|A|1991
8YOP|1|L5|U|1992
8YOP|1|L5|C|1993

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

Large ribosomal subunit protein uL10

Chain Lt

60S ribosomal protein L12