IL_8YOP_091

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8YOP|1|L5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YOP_091 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2042

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8YOP|1|L5|G|2001
8YOP|1|L5|A|2002
8YOP|1|L5|G|2003
8YOP|1|L5|U|2004
8YOP|1|L5|G|2005
*
8YOP|1|L5|C|2014
8YOP|1|L5|U|2015
8YOP|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

Large ribosomal subunit protein uL10

Chain Lt

60S ribosomal protein L12