IL_8YOP_119

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

8YOP|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|G|2901
8YOP|1|L5|G|2902
8YOP|1|L5|G|2903
8YOP|1|L5|U|2904
8YOP|1|L5|C|2905
*
8YOP|1|L5|G|3589
8YOP|1|L5|G|3590
8YOP|1|L5|C|3591
8YOP|1|L5|G|3592
8YOP|1|L5|C|3593
8YOP|1|L5|C|3594
8YOP|1|L5|U|3595
8YOP|1|L5|A|3596
8YOP|1|L5|G|3597
8YOP|1|L5|C|3598

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11