IL_8YOP_126

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAUGUCAAAGU*AAUGAAGCGC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|G|3710
8YOP|1|L5|A|3711
8YOP|1|L5|A|3712
8YOP|1|L5|U|3713
8YOP|1|L5|G|3714
8YOP|1|L5|U|3715
8YOP|1|L5|C|3716
8YOP|1|L5|A|3717
8YOP|1|L5|A|3718
8YOP|1|L5|A|3719
8YOP|1|L5|G|3720
8YOP|1|L5|U|3721
*
8YOP|1|L5|A|3732
8YOP|1|L5|A|3733
8YOP|1|L5|U|3734
8YOP|1|L5|G|3735
8YOP|1|L5|A|3736
8YOP|1|L5|A|3737
8YOP|1|L5|G|3738
8YOP|1|L5|C|3739
8YOP|1|L5|G|3740
8YOP|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain S2

Small subunit ribosomal RNA; SSU rRNA