IL_8YOP_135

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAGAGGUGUAGAAUAAG*UACUCUGA

Length

26 nucleotides

Bulged bases

8YOP|1|L5|G|3958, 8YOP|1|L5|A|3962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|U|3950
8YOP|1|L5|G|3951
8YOP|1|L5|A|3952
8YOP|1|L5|G|3953
8YOP|1|L5|A|3954
8YOP|1|L5|G|3955
8YOP|1|L5|G|3956
8YOP|1|L5|U|3957
8YOP|1|L5|G|3958
8YOP|1|L5|U|3959
8YOP|1|L5|A|3960
8YOP|1|L5|G|3961
8YOP|1|L5|A|3962
8YOP|1|L5|A|3963
8YOP|1|L5|U|3964
8YOP|1|L5|A|3965
8YOP|1|L5|A|3966
8YOP|1|L5|G|3967
*
8YOP|1|L5|U|4055
8YOP|1|L5|A|4056
8YOP|1|L5|C|4057
8YOP|1|L5|U|4058
8YOP|1|L5|C|4059
8YOP|1|L5|U|4060
8YOP|1|L5|G|4061
8YOP|1|L5|A|4062

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a